SNP Profiles matching EET 399 [ECU]

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 Key

 1234567891011121314
_Input profile
CCAGCCTTCTAATTGGCTCCAAGGCCAA
1._EET_399_[ECU]
CCAGCCTTCTAATTGGCTCCAAGGCCAA
2._EET_399_[ECU]
CCAGCCTTCTAATTGGCTCCAAGGCCAA
3._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
4._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
5._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
6._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
7._UF_12
CCAGCCTTCTAATTGGCTCCAAGGCCAA
8._EET_399_[ECU]
CCAGCCTTCTAATTGGCTCCAAGGCCAA
9._EET_399_[ECU]
CCAGCCTTCTAATTGGCTCCAAGGCCAA
10._EET_399_[ECU]
CCAGCCTTCTAATTGGCTCCAAGGCCAA
11._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
12._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
13._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
14._RUQ_745
CCAGCCTTCTACTTGGCTCCAAGGCCAA
15._RUQ_745
_AGCCTT___GG____CCAA
16._EET_400_[ECU]
_AGCCTT_ACTTGTCT__GGCCAA
17._EET_400_[ECU]
CCAGCCTTCTAATTGTCTCCAAGGCCAA
18._EET_400_[ECU]
CCAGCCTTCTAATTGTCTCCAAGGCCAA
19._EET_400_[ECU]
CCAGCCTTCTAATTGTCTCCAAGGCCAA
20._GC-01-066-4-02
CCAGCCTTCTAATTGTCTCCAAGGCCAA
21._GC-01-066-4-02
CCAGCCTTCTAATTGTCTCCAAGGCCAA
22._GC-01-066-4-02
CCAGCCTTCTAATTGTCTCCAAGGCCAA
23._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
24._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
25._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
26._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
27._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
28._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
29._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
30._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
31._GC-01-115-6-12
CCAGCCTTCTAATTGTCTCCAAGGCCAA
32._GC-01-115-6-12
CCAGCCTTCTAATTGTCTCCAAGGCCAA
33._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
34._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
35._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
36._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
37._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
38._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
39._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
40._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
41._EET_400_[ECU]
CCAGCCTTCTACTTGTCTCCAAGGCCAA
 1516171819202122232425262728
_Input profile
TTAACGCTCTCGGTAACTACGGGGCTAG
1._EET_399_[ECU]
TTAACGCTCTCGGTAACTACGGGGCTAG
2._EET_399_[ECU]
TTAACGCTCTCGGTAACTACGGGGCTAG
3._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGGGGCTAG
4._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGGGGCTAG
5._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGGGGCTAG
6._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGGGGCTAG
7._UF_12
TTAACGCTCTCGGTAACTACGGGGCTAG
8._EET_399_[ECU]
TTAACGCTCTCGGTAACTACGGGGCTAG
9._EET_399_[ECU]
TTAACGCTCTCGGTAACTACGGGGCTAG
10._EET_399_[ECU]
TTAACGCTCTCGGTAACTACGG_CTAG
11._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGG_CTAG
12._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGGGGCTAG
13._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGGGGCTAG
14._RUQ_745
TTAACGCTCTCGGTAACTACGGGGCTAG
15._RUQ_745
____TTCGGT_CTACGGGGCTAG
16._EET_400_[ECU]
TTAACGCTCTCGGGAACTACGGGGCTAG
17._EET_400_[ECU]
TTAACGCTCTCGGGAACTACGGGGCTAG
18._EET_400_[ECU]
TTAACGCTCTCGGGAACTACGGGGCTAG
19._EET_400_[ECU]
TTAACGCTCTCGGGAACTACGGGGCTAG
20._GC-01-066-4-02
TTAACGCTCTCGGGAACTACGGGGCTAG
21._GC-01-066-4-02
TTAACGCTCTCGGGAACTACGGGGCTAG
22._GC-01-066-4-02
TTAACGCTCTCGGGAACTACGGGGCTAG
23._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAG
24._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAG
25._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAG
26._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAG
27._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAG
28._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAG
29._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAG
30._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAG
31._GC-01-115-6-12
TTAACGCTCTCGGGAACTACGGGGCTAG
32._GC-01-115-6-12
TTAACGCTCTCGGGAACTACGGGGCTAG
33._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAG
34._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAG
35._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAG
36._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAG
37._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAG
38._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAG
39._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAG
40._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAG
41._EET_400_[ECU]
TTAACGCTCTCGGGAACTACGGGGCTAG
 2930313233343536373839   
_Input profile
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
1._EET_399_[ECU]
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
2._EET_399_[ECU]
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
3._GC-04-047-3-11
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
4._GC-04-047-3-11
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
5._GC-04-047-3-11
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
6._GC-04-047-3-11
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
7._UF_12
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
8._EET_399_[ECU]
GGAACCGGGGCC_GTACATGGX_XX_XX_X
9._EET_399_[ECU]
GGAACCGGGGCC_GTACATGGX_XX_XX_X
10._EET_399_[ECU]
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
11._GC-04-047-3-11
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
12._GC-04-047-3-11
GGAACCGGGGCC_GTACATGGX_XX_XX_X
13._GC-04-047-3-11
GGAACCGGGGCC_GTACATGGX_XX_XX_X
14._RUQ_745
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
15._RUQ_745
_AACCGGGGCCCTGTAC__X_XX_XX_X
16._EET_400_[ECU]
GGAACCAG_CCCTGTACATGGX_XX_XX_X
17._EET_400_[ECU]
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
18._EET_400_[ECU]
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
19._EET_400_[ECU]
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
20._GC-01-066-4-02
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
21._GC-01-066-4-02
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
22._GC-01-066-4-02
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
23._POUND_10_/B
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
24._POUND_10_/B
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
25._POUND_10_/B
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
26._POUND_10_/B
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
27._POUND_10_/B
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
28._POUND_10_/B
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
29._POUND_10_/B
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
30._POUND_10_/B
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
31._GC-01-115-6-12
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
32._GC-01-115-6-12
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
33._GC-08-162-4-05
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
34._GC-08-162-4-05
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
35._GC-08-162-4-05
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
36._GC-08-162-4-05
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
37._GC-08-162-4-05
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
38._GC-08-162-4-05
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
39._POUND_10_/B
GG_CTAGCCCCCTGTACATGGX_XX_XX_X
40._GC-08-162-4-05
GG_CTAGCCCCCTGTACATGGX_XX_XX_X
41._EET_400_[ECU]
GGAACTAGCCCCCTGTACATGGX_XX_XX_X

Input profile: EET_399_[ECU]

 
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Mars Center for Cocoa Science, Brazil
Location: 4311 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

1._EET_399_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4311 6 > FP
 Dapeng Zhang, 2016

2._EET_399_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4311 2
 Dapeng Zhang, 2016

3._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

4._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2
 Mars, 2018

6._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

7._UF_12

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5221 5
 Dapeng Zhang, 2016

8._EET_399_[ECU]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4311 8 > FP
 Dapeng Zhang, 2016

9._EET_399_[ECU]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4311 5 > FP
 Dapeng Zhang, 2016

10._EET_399_[ECU]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4311 3 > FP
 Dapeng Zhang, 2016

11._EET_399_[ECU] GC-04-047-3-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

12._EET_399_[ECU] GC-04-047-3-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

13._EET_399_[ECU] GC-04-047-3-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

14._EET_399_[ECU] RUQ_745

98.7 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._EET_399_[ECU] RUQ_745

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._EET_400_[ECU]

94.1 %
34 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

17._EET_400_[ECU]

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

18._EET_400_[ECU]

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

19._EET_400_[ECU]

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

20._EET_400_[ECU] GC-01-066-4-02

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

21._EET_400_[ECU] GC-01-066-4-02

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

22._EET_400_[ECU] GC-01-066-4-02

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

23._POUND_10_/B

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1612 10
 Dapeng Zhang, 2016

24._POUND_10_/B

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1612 2 > FP
 Dapeng Zhang, 2016

25._POUND_10_/B

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 2
 Dapeng Zhang, 2016

26._POUND_10_/B

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 4
 Dapeng Zhang, 2016

27._POUND_10_/B

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 5
 Dapeng Zhang, 2016

28._POUND_10_/B

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 6
 Dapeng Zhang, 2016

29._POUND_10_/B

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 8
 Dapeng Zhang, 2016

30._POUND_10_/B

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 10
 Dapeng Zhang, 2016

31._POUND_10_/B GC-01-115-6-12

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

32._POUND_10_/B GC-01-115-6-12

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

33._POUND_10_/B GC-08-162-4-05

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

34._POUND_10_/B GC-08-162-4-05

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

35._POUND_10_/B GC-08-162-4-05

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

36._POUND_10_/B GC-08-162-4-05

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

37._POUND_10_/B GC-08-162-4-05

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

38._POUND_10_/B GC-08-162-4-05

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

39._POUND_10_/B

92.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 11
 Dapeng Zhang, 2016

40._POUND_10_/B GC-08-162-4-05

92.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

41._EET_400_[ECU]

91 %
39 shared markers

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Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25